IL_3J7Z_018

3D structure

PDB id

3J7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmCL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

3J7Z|1|A|G|801, 3J7Z|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Z_018 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.062

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

3J7Z|1|A|G|674
3J7Z|1|A|A|675
3J7Z|1|A|A|676
3J7Z|1|A|A|677
3J7Z|1|A|C|678
*
3J7Z|1|A|G|799
3J7Z|1|A|A|800
3J7Z|1|A|G|801
3J7Z|1|A|A|802
3J7Z|1|A|U|803
3J7Z|1|A|A|804
3J7Z|1|A|G|805
3J7Z|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15