IL_3J81_002

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCA*UA

Length

5 nucleotides

Bulged bases

3J81|1|2|C|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_002 not in the Motif Atlas

Homologous match to IL_8C3A_392

Geometric discrepancy: 0.5417

The information below is about IL_8C3A_392

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

35

Unit IDs

3J81|1|2|U|24
3J81|1|2|C|25
3J81|1|2|A|26
*
3J81|1|2|U|599
3J81|1|2|A|600

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

uS4

Chain X

uS12