IL_3J81_014

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_014 not in the Motif Atlas

Homologous match to IL_4V88_396

Geometric discrepancy: 0.1952

The information below is about IL_4V88_396

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

3J81|1|2|C|185
3J81|1|2|G|186
3J81|1|2|A|187
3J81|1|2|C|188
*
3J81|1|2|G|195
3J81|1|2|A|196
3J81|1|2|A|197
3J81|1|2|G|198

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS8