IL_3J81_053
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J81_053 not in the Motif Atlas
- Homologous match to IL_4V88_438
- Geometric discrepancy: 0.1211
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
3J81|1|2|G|1040
3J81|1|2|G|1041
3J81|1|2|A|1042
3J81|1|2|U|1043
*
3J81|1|2|G|1073
3J81|1|2|C|1074
3J81|1|2|A|1075
3J81|1|2|C|1076
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- uS2
- Chain B
- eS1
- Chain N
- uS15
- Chain a
- eS26
Coloring options: