IL_3J81_060
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGG*CCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: AGG,CCU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J81_060 not in the Motif Atlas
- Geometric match to IL_4LFB_061
- Geometric discrepancy: 0.1444
- The information below is about IL_4LFB_061
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
3J81|1|2|A|1151
3J81|1|2|G|1152
3J81|1|2|G|1153
*
3J81|1|2|C|1622
3J81|1|2|C|1623
3J81|1|2|U|1624
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 3
- mRNA
- Chain C
- uS5
- Chain a
- eS26
- Chain c
- eS28
Coloring options: