IL_3J81_065

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

3J81|1|2|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_065 not in the Motif Atlas

Geometric match to IL_3MEI_001

Geometric discrepancy: 0.1744

The information below is about IL_3MEI_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3J81|1|2|G|1267
3J81|1|2|U|1268
3J81|1|2|G|1269
*
3J81|1|2|C|1438
3J81|1|2|C|1439

Current chains

Chain 2

18S rRNA

Nearby chains

Chain d

uS14

Chain f

eS31