IL_3J81_066
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 3J81|1|2|C|1273
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J81_066 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.2905
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
3J81|1|2|G|1270
3J81|1|2|U|1271
3J81|1|2|G|1272
3J81|1|2|C|1273
3J81|1|2|A|1274
3J81|1|2|U|1275
*
3J81|1|2|A|1434
3J81|1|2|U|1435
3J81|1|2|G|1436
3J81|1|2|C|1437
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 3
- mRNA
- Chain D
- uS3
- Chain K
- eS10
- Chain U
- uS10
- Chain d
- uS14
- Chain f
- eS31
- Chain i
- eIF1A
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