IL_3J81_067
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGGC*GUCUGUGA
- Length
- 12 nucleotides
- Bulged bases
- 3J81|1|2|U|1430, 3J81|1|2|G|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J81_067 not in the Motif Atlas
- Homologous match to IL_8C3A_457
- Geometric discrepancy: 0.1826
- The information below is about IL_8C3A_457
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_55620.1
- Basepair signature
- cWW-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
3J81|1|2|U|1275
3J81|1|2|G|1276
3J81|1|2|G|1277
3J81|1|2|C|1278
*
3J81|1|2|G|1427
3J81|1|2|U|1428
3J81|1|2|C|1429
3J81|1|2|U|1430
3J81|1|2|G|1431
3J81|1|2|U|1432
3J81|1|2|G|1433
3J81|1|2|A|1434
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS3
- Chain K
- eS10
- Chain U
- uS10
- Chain d
- uS14
- Chain i
- eIF1A
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