IL_8C3A_457

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGC*GUCUGUGA

Length

12 nucleotides

Bulged bases

8C3A|1|CM|U|1418, 8C3A|1|CM|G|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55620.1

Basepair signature

cWW-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

8C3A|1|CM|U|1261
8C3A|1|CM|G|1262
8C3A|1|CM|G|1263
8C3A|1|CM|C|1264
*
8C3A|1|CM|G|1415
8C3A|1|CM|U|1416
8C3A|1|CM|C|1417
8C3A|1|CM|U|1418
8C3A|1|CM|G|1419
8C3A|1|CM|U|1420
8C3A|1|CM|G|1421
8C3A|1|CM|A|1422

Current chains

Chain CM

18S

Nearby chains

Chain CL

60S ribosomal protein CAALFM_C304810CA

Chain CQ

Ribosomal protein S3

Chain CX

40S ribosomal protein S10-A

Chain DH

Ribosomal protein S10

Chain DQ

40S ribosomal protein S29A

Chain DS

Ubiquitin-40S ribosomal protein S31 fusion protein