IL_3J81_076
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCGG*CGA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J81_076 not in the Motif Atlas
- Geometric match to IL_4P3T_002
- Geometric discrepancy: 0.3593
- The information below is about IL_4P3T_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01472.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J81|1|2|U|1390
3J81|1|2|C|1391
3J81|1|2|G|1392
3J81|1|2|G|1393
*
3J81|1|2|C|1402
3J81|1|2|G|1403
3J81|1|2|A|1404
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- uS7
- Chain R
- eS17
- Chain c
- eS28
- Chain g
- RACK1
Coloring options: