IL_3J81_089

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_089 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.2248

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

3J81|1|2|U|1667
3J81|1|2|G|1668
3J81|1|2|A|1669
3J81|1|2|G|1670
*
3J81|1|2|C|1727
3J81|1|2|A|1728
3J81|1|2|A|1729
3J81|1|2|A|1730

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6

Chain I

eS8