IL_3J81_094

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCGC*GCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCGC,GCGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_094 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3386

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.3

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

3J81|1|1|G|2
3J81|1|1|C|3
3J81|1|1|G|4
3J81|1|1|C|5
*
3J81|1|1|G|68
3J81|1|1|C|69
3J81|1|1|G|70
3J81|1|1|C|71

Current chains

Chain 1

Met-tRNAi

Nearby chains

Chain j

eIF2 alpha

Chain m

eIF1