IL_3J81_104

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

3J81|1|2|G|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_104 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.31

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

3J81|1|2|U|892
3J81|1|2|U|893
3J81|1|2|G|894
3J81|1|2|U|895
3J81|1|2|C|896
3J81|1|2|A|897
3J81|1|2|G|898
*
3J81|1|2|C|909
3J81|1|2|U|910
3J81|1|2|U|911
3J81|1|2|G|912
3J81|1|2|G|913
3J81|1|2|A|914
3J81|1|2|U|915
3J81|1|2|U|916
3J81|1|2|U|917
3J81|1|2|A|918

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

eS1

Chain O

uS11

Chain j

eIF2 alpha