IL_8P9A_422

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8P9A|1|sR|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8P9A|1|sR|U|893
8P9A|1|sR|U|894
8P9A|1|sR|G|895
8P9A|1|sR|U|896
8P9A|1|sR|C|897
8P9A|1|sR|A|898
8P9A|1|sR|G|899
*
8P9A|1|sR|C|910
8P9A|1|sR|U|911
8P9A|1|sR|U|912
8P9A|1|sR|G|913
8P9A|1|sR|G|914
8P9A|1|sR|A|915
8P9A|1|sR|U|916
8P9A|1|sR|U|917
8P9A|1|sR|U|918
8P9A|1|sR|A|919

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain CD

60S ribosomal protein L2-A

Chain c4

40S ribosomal protein S14-B

Chain s1

40S ribosomal protein S1-A