IL_3J81_108
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 3J81|1|2|U|1430, 3J81|1|2|G|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J81_108 not in the Motif Atlas
- Homologous match to IL_8P9A_440
- Geometric discrepancy: 0.1849
- The information below is about IL_8P9A_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
3J81|1|2|U|1275
3J81|1|2|G|1276
3J81|1|2|G|1277
*
3J81|1|2|U|1428
3J81|1|2|C|1429
3J81|1|2|U|1430
3J81|1|2|G|1431
3J81|1|2|U|1432
3J81|1|2|G|1433
3J81|1|2|A|1434
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS3
- Chain K
- eS10
- Chain U
- uS10
- Chain d
- uS14
- Chain i
- eIF1A
Coloring options: