IL_3J81_110

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_110 not in the Motif Atlas

Geometric match to IL_8C3A_146

Geometric discrepancy: 0.2332

The information below is about IL_8C3A_146

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_06586.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

3J81|1|2|C|1391
3J81|1|2|G|1392
3J81|1|2|G|1393
*
3J81|1|2|C|1402
3J81|1|2|G|1403

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

uS7

Chain R

eS17

Chain c

eS28

Chain g

RACK1