IL_3J81_115

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUG*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_115 not in the Motif Atlas

Homologous match to IL_8CRE_406

Geometric discrepancy: 0.2752

The information below is about IL_8CRE_406

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

3J81|1|2|C|269
3J81|1|2|A|270
3J81|1|2|U|271
3J81|1|2|G|272
*
3J81|1|2|U|282
3J81|1|2|G|283
3J81|1|2|G|284

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6