Motif IL_15698.5 Version IL_15698.5 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3V7E_007 | 3V7E | 0.2236 | 0 | Major groove platform with extra pair (H) | D | SAM-I riboswitch | C | 244 | A | 245 | A | 246 | C | 247 | * | G | 288 | U | 289 | G | 290 | cWW | tSH | cSH | cWW | |
| 2 | IL_5FJC_003 | 5FJC | 0.1754 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | cSH | cWW | |
| 3 | IL_4OQU_001 | 4OQU | 0.1719 | 0 | Major groove platform with extra pair | A | SAM-I/IV riboswitch | C | 24 | A | 25 | A | 26 | C | 27 | * | G | 46 | U | 47 | G | 48 | cWW | tSH | cSH | cWW | |
| 4 | IL_4AOB_003 | 4AOB | 0.1967 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | ncSH | cWW | |
| 5 | IL_4KQY_003 | 4KQY | 0.0000 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 45 | A | 46 | A | 47 | C | 48 | * | G | 77 | U | 78 | G | 79 | cWW | ntSH | cSH | cWW | |
| 6 | IL_8P9A_389 | 8P9A | 0.4574 | 0 | sR | SSU rRNA | C | 270 | A | 271 | U | 272 | G | 273 | * | U | 283 | G | 284 | G | 285 | cWW | cWW | ||||
| 7 | IL_8CRE_406 | 8CRE | 0.5654 | 0 | CM | SSU rRNA | C | 268 | A | 269 | U | 270 | G | 271 | * | U | 281 | G | 282 | G | 283 | cWW | ncSW | ncWW | |||
| 8 | IL_8GLP_208 | 8GLP | 0.5902 | 0 | S2 | SSU rRNA | C | 317 | A | 318 | C | 319 | G | 320 | * | C | 331 | G | 332 | G | 333 | cWW | ncSW | cWW | |||
| 9 | IL_8OI5_066 | 8OI5 | 0.4829 | 0 | 1 | LSU rRNA | G | 1614 | A | 1615 | U | 1616 | A | 1617 | * | U | 1820 | G | 1821 | C | 1822 | cWW | cSW | cWW | |||
| 10 | IL_8P9A_292 | 8P9A | 0.4938 | 0 | Other IL (H) | AR | LSU rRNA | G | 1618 | A | 1619 | U | 1620 | A | 1621 | * | U | 1824 | G | 1825 | C | 1826 | cWW | ncSW | cWW | ||
| 11 | IL_5DO4_004 | 5DO4 | 0.5197 | 2 | A | RNA (25-MER) | G | 3 | A | 4 | A | 5 | A | 8 | * | UMS | 21 | A | 22 | CFZ | 23 | cWW | cSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAC*GUG | 5 |
| CAUG*UGG | 2 |
| GAUA*UGC | 2 |
| CACG*CGG | 1 |
| GAA(CFZ)AA*(UMS)A(CFZ) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*U | 5 |
| AU*G | 4 |
| AC*G | 1 |
| AA(CFZ)A*A | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Major groove platform with extra pair (4)
- Major groove platform with extra pair (H) (1)
- Other IL (H) (1)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.07 | Avg 0.41 | Max 0.68
Coloring options: