IL_3J81_117

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAAAAAUU*AUAUUAGC

Length

17 nucleotides

Bulged bases

3J81|1|2|U|793, 3J81|1|2|U|794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_117 not in the Motif Atlas

Homologous match to IL_8CRE_430

Geometric discrepancy: 0.3493

The information below is about IL_8CRE_430

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59049.2

Basepair signature

cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

3J81|1|2|G|751
3J81|1|2|A|752
3J81|1|2|A|753
3J81|1|2|A|754
3J81|1|2|A|755
3J81|1|2|A|756
3J81|1|2|A|757
3J81|1|2|U|758
3J81|1|2|U|759
*
3J81|1|2|A|790
3J81|1|2|U|791
3J81|1|2|A|792
3J81|1|2|U|793
3J81|1|2|U|794
3J81|1|2|A|795
3J81|1|2|G|796
3J81|1|2|C|797

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain L

uS17

Chain W

uS8