IL_3J8G_071

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_071 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.2018

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

3J8G|1|B|G|1666
3J8G|1|B|G|1667
3J8G|1|B|A|1668
3J8G|1|B|A|1669
3J8G|1|B|C|1670
3J8G|1|B|U|1671
3J8G|1|B|A|1672
3J8G|1|B|G|1673
3J8G|1|B|G|1674
*
3J8G|1|B|C|1990
3J8G|1|B|U|1991
3J8G|1|B|G|1992
3J8G|1|B|U|1993
3J8G|1|B|C|1994

Current chains

Chain B

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14