IL_3J8G_073

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

3J8G|1|B|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_073 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1973

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3J8G|1|B|U|1712
3J8G|1|B|A|1713
3J8G|1|B|U|1714
3J8G|1|B|G|1715
3J8G|1|B|U|1716
3J8G|1|B|A|1717
3J8G|1|B|G|1718
*
3J8G|1|B|U|1742
3J8G|1|B|G|1743
3J8G|1|B|A|1744
3J8G|1|B|A|1745
3J8G|1|B|A|1746

Current chains

Chain B

23S rRNA

Nearby chains