IL_3J8G_096

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_096 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1826

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3J8G|1|B|C|2466
3J8G|1|B|C|2467
3J8G|1|B|A|2468
3J8G|1|B|A|2469
3J8G|1|B|G|2470
*
3J8G|1|B|C|2480
3J8G|1|B|G|2481
3J8G|1|B|A|2482
3J8G|1|B|C|2483
3J8G|1|B|G|2484

Current chains

Chain B

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain M

50S ribosomal protein L16