IL_3J8G_100

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

3J8G|1|B|A|2542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_100 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.1952

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

3J8G|1|B|U|2522
3J8G|1|B|G|2523
*
3J8G|1|B|C|2540
3J8G|1|B|A|2541
3J8G|1|B|A|2542
3J8G|1|B|G|2543

Current chains

Chain B

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain J

50S ribosomal protein L13