IL_3J8G_115

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUU*GGAC

Length

7 nucleotides

Bulged bases

3J8G|1|B|G|729

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_115 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2141

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

3J8G|1|B|G|701
3J8G|1|B|U|702
3J8G|1|B|U|703
*
3J8G|1|B|G|728
3J8G|1|B|G|729
3J8G|1|B|A|730
3J8G|1|B|C|731

Current chains

Chain B

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2