IL_3J8G_119

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCGAGG*CGUAGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_119 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.2779

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J8G|1|B|G|1356
3J8G|1|B|C|1357
3J8G|1|B|G|1358
3J8G|1|B|A|1359
3J8G|1|B|G|1360
3J8G|1|B|G|1361
*
3J8G|1|B|C|1370
3J8G|1|B|G|1371
3J8G|1|B|U|1372
3J8G|1|B|A|1373
3J8G|1|B|G|1374
3J8G|1|B|U|1375

Current chains

Chain B

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2