IL_3J92_031

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_031 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.2457

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

3J92|1|5|G|500
3J92|1|5|C|501
3J92|1|5|C|502
3J92|1|5|C|503
3J92|1|5|G|504
3J92|1|5|G|505
*
3J92|1|5|U|653
3J92|1|5|C|654

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain Q

eL18