IL_3J92_032

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

3J92|1|5|A|509

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_032 not in the Motif Atlas

Geometric match to IL_1U63_004

Geometric discrepancy: 0.2625

The information below is about IL_1U63_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

3J92|1|5|G|508
3J92|1|5|A|509
3J92|1|5|U|510
*
3J92|1|5|A|649
3J92|1|5|C|650

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain a

uL15