IL_3J92_033

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUUC*GGG

Length

8 nucleotides

Bulged bases

3J92|1|5|U|513

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_033 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2434

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

3J92|1|5|C|511
3J92|1|5|U|512
3J92|1|5|U|513
3J92|1|5|U|514
3J92|1|5|C|515
*
3J92|1|5|G|646
3J92|1|5|G|647
3J92|1|5|G|648

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain a

uL15