IL_3J92_034

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

3J92|1|5|G|1288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_034 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.3114

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

3J92|1|5|G|708
3J92|1|5|C|709
*
3J92|1|5|G|1287
3J92|1|5|G|1288
3J92|1|5|C|1289

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain f

eL33