IL_3J92_053

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_053 not in the Motif Atlas

Geometric match to IL_4WF9_087

Geometric discrepancy: 0.1399

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

3J92|1|5|C|1431
3J92|1|5|G|1432
3J92|1|5|A|1433
3J92|1|5|G|1434
*
3J92|1|5|C|1450
3J92|1|5|G|1451
3J92|1|5|A|1452
3J92|1|5|G|1453

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

eL18