IL_3J92_059

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_059 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.1177

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

3J92|1|5|C|1551
3J92|1|5|G|1552
3J92|1|5|A|1553
3J92|1|5|A|1554
3J92|1|5|G|1555
*
3J92|1|5|U|1572
3J92|1|5|G|1573
3J92|1|5|G|1574
3J92|1|5|A|1575
3J92|1|5|G|1576

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain R

eL19

Chain p

eL43