IL_3J92_067
3D structure
- PDB id
- 3J92 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure and assembly pathway of the ribosome quality control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J92_067 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1673
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J92|1|5|C|1732
3J92|1|5|G|1733
3J92|1|5|G|1734
3J92|1|5|U|1735
3J92|1|5|A|1736
3J92|1|5|A|1737
*
3J92|1|5|U|1792
3J92|1|5|A|1793
3J92|1|5|A|1794
3J92|1|5|A|1795
3J92|1|5|U|1796
3J92|1|5|G|1797
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- eL30
- Chain I
- uL16
- Chain S
- eL20
- Chain T
- eL21
Coloring options: