IL_3J92_100

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

3J92|1|5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_100 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2449

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

3J92|1|5|C|2646
3J92|1|5|A|2647
3J92|1|5|G|2648
*
3J92|1|5|C|2685
3J92|1|5|G|2686
3J92|1|5|U|2687
3J92|1|5|G|2688

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

eL34