IL_3J92_105

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_105 not in the Motif Atlas

Homologous match to IL_8C3A_081

Geometric discrepancy: 0.116

The information below is about IL_8C3A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

3J92|1|5|A|2844
3J92|1|5|A|2845
3J92|1|5|G|2846
*
3J92|1|5|C|3842
3J92|1|5|C|3843
3J92|1|5|U|3844

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

uL14

Chain W

eL24