IL_3J92_116

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

3J92|1|5|U|3709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_116 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.2228

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

3J92|1|5|C|3708
3J92|1|5|U|3709
3J92|1|5|G|3710
*
3J92|1|5|C|3741
3J92|1|5|G|3742

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2