IL_3J92_119

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GA*UUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J92_119 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.3362

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

3J92|1|5|G|3722
3J92|1|5|A|3723
*
3J92|1|5|U|3729
3J92|1|5|U|3730
3J92|1|5|C|3731

Current chains

Chain 5

28S rRNA

Nearby chains

Chain i

eL36

Chain o

eL42