IL_3J92_158

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUCGGAUAGC*GUGCGGAGUGC

Length

23 nucleotides

Bulged bases

3J92|1|5|C|4756, 3J92|1|5|C|4757, 3J92|1|5|U|4763, 3J92|1|5|C|4871, 3J92|1|5|A|4874, 3J92|1|5|G|4877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J92|1|5|G|4755
3J92|1|5|C|4756
3J92|1|5|C|4757
3J92|1|5|U|4758
3J92|1|5|C|4759
3J92|1|5|G|4760
3J92|1|5|G|4761
3J92|1|5|A|4762
3J92|1|5|U|4763
3J92|1|5|A|4764
3J92|1|5|G|4765
3J92|1|5|C|4766
*
3J92|1|5|G|4868
3J92|1|5|U|4869
3J92|1|5|G|4870
3J92|1|5|C|4871
3J92|1|5|G|4872
3J92|1|5|G|4873
3J92|1|5|A|4874
3J92|1|5|G|4875
3J92|1|5|U|4876
3J92|1|5|G|4877
3J92|1|5|C|4878

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain H

uL6

Chain M

eL14

Chain O

uL13

Chain S

eL20