IL_3J9M_002
3D structure
- PDB id
- 3J9M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome (class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAAGUAU*AGAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J9M_002 not in the Motif Atlas
- Geometric match to IL_4V9F_106
- Geometric discrepancy: 0.1437
- The information below is about IL_4V9F_106
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
3J9M|1|A|A|1739
3J9M|1|A|A|1740
3J9M|1|A|A|1741
3J9M|1|A|G|1742
3J9M|1|A|U|1743
3J9M|1|A|A|1744
3J9M|1|A|U|1745
*
3J9M|1|A|A|1753
3J9M|1|A|G|1754
3J9M|1|A|A|1755
3J9M|1|A|A|1756
3J9M|1|A|A|1757
3J9M|1|A|U|1758
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 3
- bL35m
- Chain H
- bL9m
- Chain M
- uL15m
- Chain X
- bL28m
- Chain i
- mL51
- Chain q
- mL64 (CRIF1)
Coloring options: