IL_3J9M_012

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAG*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_012 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.2148

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

3J9M|1|A|A|1925
3J9M|1|A|A|1926
3J9M|1|A|G|1927
*
3J9M|1|A|U|1977
3J9M|1|A|A|1978
3J9M|1|A|U|1979

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

bL34m

Chain D

uL2m