IL_3J9M_014

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_014 not in the Motif Atlas

Homologous match to IL_7A0S_019

Geometric discrepancy: 0.1298

The information below is about IL_7A0S_019

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

3J9M|1|A|C|1948
3J9M|1|A|G|1949
3J9M|1|A|U|1950
3J9M|1|A|C|1951
*
3J9M|1|A|G|1966
3J9M|1|A|U|1967
3J9M|1|A|G|1968

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

bL34m