IL_3J9M_030

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_030 not in the Motif Atlas

Geometric match to IL_5J7L_306

Geometric discrepancy: 0.073

The information below is about IL_5J7L_306

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

3J9M|1|A|G|2470
3J9M|1|A|G|2471
3J9M|1|A|A|2472
3J9M|1|A|A|2473
*
3J9M|1|A|U|2656
3J9M|1|A|C|2657

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

uL3m

Chain L

uL14m

Chain Q

bL19m