IL_3J9M_031

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

3J9M|1|A|G|2655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_031 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.0711

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

3J9M|1|A|A|2473
3J9M|1|A|C|2474
3J9M|1|A|U|2475
3J9M|1|A|C|2476
3J9M|1|A|G|2477
3J9M|1|A|G|2478
*
3J9M|1|A|C|2653
3J9M|1|A|U|2654
3J9M|1|A|G|2655
3J9M|1|A|U|2656

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

uL3m

Chain L

uL14m

Chain Q

bL19m