IL_3J9M_035

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*UUAA

Length

6 nucleotides

Bulged bases

3J9M|1|A|U|2563, 3J9M|1|A|A|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_035 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.1189

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

3J9M|1|A|U|2552
3J9M|1|A|G|2553
*
3J9M|1|A|U|2562
3J9M|1|A|U|2563
3J9M|1|A|A|2564
3J9M|1|A|A|2565

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

uL2m