IL_3J9M_050

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_050 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.2135

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

3J9M|1|A|A|2946
3J9M|1|A|U|2947
3J9M|1|A|C|2948
*
3J9M|1|A|G|2976
3J9M|1|A|G|2977
3J9M|1|A|U|2978
3J9M|1|A|U|2979
3J9M|1|A|U|2980

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

uL10m

Chain N

uL16m

Chain o

mL63