IL_3J9M_054

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

3J9M|1|A|G|3063, 3J9M|1|A|A|3064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_054 not in the Motif Atlas

Geometric match to IL_4WF9_095

Geometric discrepancy: 0.1537

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

3J9M|1|A|A|2997
3J9M|1|A|U|2998
3J9M|1|A|C|2999
*
3J9M|1|A|G|3061
3J9M|1|A|U|3062
3J9M|1|A|G|3063
3J9M|1|A|A|3064
3J9M|1|A|U|3065

Current chains

Chain A

16S rRNA

Nearby chains

Chain 0

bL32m

Chain E

uL3m