IL_3J9M_055

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

3J9M|1|A|A|3059, 3J9M|1|A|C|3060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_055 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.0999

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

3J9M|1|A|C|2999
3J9M|1|A|A|3000
*
3J9M|1|A|U|3058
3J9M|1|A|A|3059
3J9M|1|A|C|3060
3J9M|1|A|G|3061

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

uL3m

Chain K

uL13m