IL_3J9M_062

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAG*UCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_062 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2445

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

3J9M|1|AA|U|674
3J9M|1|AA|A|675
3J9M|1|AA|G|676
*
3J9M|1|AA|U|921
3J9M|1|AA|C|922
3J9M|1|AA|A|923

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AJ

uS12m

Chain AO

mS40 (bS18b)