IL_3J9M_075

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

3J9M|1|AA|C|904, 3J9M|1|AA|C|906, 3J9M|1|AA|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29931.1

Basepair signature

cWW-R-R-tWH-cSW-L-R-R-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

3J9M|1|AA|G|887
3J9M|1|AA|U|888
3J9M|1|AA|G|889
3J9M|1|AA|C|890
3J9M|1|AA|C|891
3J9M|1|AA|A|892
3J9M|1|AA|G|893
*
3J9M|1|AA|C|900
3J9M|1|AA|G|901
3J9M|1|AA|G|902
3J9M|1|AA|U|903
3J9M|1|AA|C|904
3J9M|1|AA|A|905
3J9M|1|AA|C|906
3J9M|1|AA|A|907
3J9M|1|AA|C|908

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

uS5m

Chain AJ

uS12m

Chain AZ

mS33