IL_3J9M_095

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_095 not in the Motif Atlas

Geometric match to IL_4LFB_047

Geometric discrepancy: 0.1169

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

3J9M|1|AA|A|1266
3J9M|1|AA|U|1267
3J9M|1|AA|C|1268
*
3J9M|1|AA|G|1323
3J9M|1|AA|U|1324
3J9M|1|AA|U|1325

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AC

uS3m

Chain AD

uS5m

Chain AG

uS9m

Chain AH

uS10m