IL_3J9W_016

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUGAAG*CGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82122.1

Basepair signature

cWW-tSH-cWH-tWH-L-tSS-tHW-L-cWW

Number of instances in this motif group

1

Unit IDs

3J9W|1|AA|U|417
3J9W|1|AA|G|418
3J9W|1|AA|A|419
3J9W|1|AA|U|420
3J9W|1|AA|G|421
3J9W|1|AA|A|422
3J9W|1|AA|A|423
3J9W|1|AA|G|424
*
3J9W|1|AA|C|435
3J9W|1|AA|G|436
3J9W|1|AA|U|437
3J9W|1|AA|A|438
3J9W|1|AA|A|439
3J9W|1|AA|A|440
3J9W|1|AA|G|441

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein uS4